SRR1779990_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779990_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	270736
Sequences flagged as poor quality	0
Sequence length	76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	39346	14.532976774422316	No Hit
CTTATACACATCTGACGCTGCCGACGAATAGAGAGGTGTAGATCTCGGTG	3504	1.2942497488328113	No Hit
CTCTTATACACATCTGACGCTGCCGACGAATAGAGAGGTGTAGATCTCGG	463	0.17101530642397023	No Hit
ATACACATCTGACGCTGCCGACGAATAGAGAGGTGTAGATCTCGGTGGTC	393	0.14515986052833757	No Hit
TCTTATACACATCTGACGCTGCCGACGAATAGAGAGGTGTAGATCTCGGT	379	0.13998877134921106	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCGAAG	15	0.002223388	69.99741	3
GCGAAGT	20	0.0069473395	52.498062	38
TCCGAGC	20	0.0069473395	52.498062	65
GCTTCGT	20	0.0069473395	52.498062	65
GTAGACG	20	0.0069473395	52.498062	4
CTGATCG	20	0.0069473395	52.498062	63
CGGGTAG	30	5.872467E-4	46.66494	10
CGTTCAT	30	5.872467E-4	46.66494	58
GCGGGTA	30	5.872467E-4	46.66494	9
ACGGAAC	30	5.872467E-4	46.66494	66
GCCGTAT	675	0.0	46.146446	54
TCGGTGG	675	0.0	45.627945	45
ATCTCGG	685	0.0	44.96184	42
TCGCCGT	670	0.0	44.923714	52
GTCGCCG	695	0.0	44.81849	51
CGGTGGT	695	0.0	44.81849	46
GATCTCG	695	0.0	44.81849	41
TGGTCGC	700	0.0	44.498356	49
CGCCGTA	685	0.0	44.450912	53
CTCGGTG	695	0.0	44.31491	44