SRR1779990_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779990_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	270736
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGT	21611	7.982314875007387	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	6208	2.293008687429821	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCC	3645	1.3463300041368713	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCG	2692	0.9943265764434726	No Hit
CTAATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGT	1710	0.6316116068790261	No Hit
CTTAAACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGT	798	0.2947520832102121	No Hit
ATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGTCTT	720	0.26594172921222153	RNA PCR Primer, Index 37 (95% over 22bp)
TCTTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCC	553	0.20425802257549788	No Hit
CATATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGT	434	0.16030376455292242	No Hit
CTAAAACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGT	337	0.12447550381183145	No Hit
CTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGTC	298	0.11007032681283613	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGCCGT	50	1.4551915E-11	62.990856	44
AGGGGGG	3355	0.0	62.38697	70
ATCGTAT	45	3.8380676E-10	62.213192	39
AGCCGTC	55	3.6379788E-11	57.264412	45
ATATCGT	65	3.6379788E-12	53.838337	37
TCGAATG	65	3.6379788E-12	53.838337	40
GAACGAG	20	0.006945237	52.50208	69
GCCGTAA	20	0.006945237	52.50208	48
GGTCGCG	20	0.006950313	52.492382	6
CAATACG	20	0.006950313	52.492382	17
CGAATGC	60	8.367351E-11	52.49238	41
AAGGGGG	3980	0.0	52.23825	69
GCCGTCT	3995	0.0	51.682106	46
CGTCTTC	3970	0.0	51.664513	48
CCGTCTT	3965	0.0	51.63185	47
TCTTCTG	3935	0.0	50.967712	50
GTCTTCT	3920	0.0	50.894867	49
TATGCCG	4155	0.0	50.534184	43
TGCCGTC	4145	0.0	50.487244	45
CGTATGC	4185	0.0	50.422787	41