SRR1779986_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779986_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	60060
Sequences flagged as poor quality	0
Sequence length	76
%GC	84

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	39575	65.8924408924409	No Hit
CTTATACACATCTGACGCTGCCGACGAATAGAGAGGTGTAGATCTCGGTG	3761	6.262071262071261	No Hit
TCTTATACACATCTGACGCTGCCGACGAATAGAGAGGTGTAGATCTCGGT	415	0.690975690975691	No Hit
CTCTTATACACATCTGACGCTGCCGACGAATAGAGAGGTGTAGATCTCGG	378	0.6293706293706294	No Hit
ATACACATCTGACGCTGCCGACGAATAGAGAGGTGTAGATCTCGGTGGTC	337	0.5611055611055611	No Hit
TCTTTATACACATCTGACGCTGCCGACGAATAGAGAGGTGTAGATCTCGG	135	0.2247752247752248	No Hit
CTATACACATCTGACGCTGCCGACGAATAGAGAGGTGTAGATCTCGGTGG	72	0.11988011988011987	No Hit
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	70	0.11655011655011654	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACAATA	15	0.0022153538	69.99417	43
GTGTCGG	15	0.0022153538	69.99417	39
CGGAGGT	15	0.0022153538	69.99417	46
TCGGAGG	15	0.0022153538	69.99417	45
TCAACAA	15	0.0022153538	69.99417	41
TCTCGGA	15	0.0022153538	69.99417	43
CCTTTGT	15	0.0022153538	69.99417	34
CTCGGAG	15	0.0022153538	69.99417	44
CATATAA	15	0.0022153538	69.99417	1
AAAAAGG	450	0.0	55.99534	70
AAGGGGG	45	2.6480848E-8	54.43991	70
GTATCAT	615	0.0	52.922424	57
TCATTAA	615	0.0	52.922424	60
CGTATCA	610	0.0	52.78249	56
CCGTATC	605	0.0	52.640244	55
ACGCAGC	20	0.00689964	52.539375	15
CGCAGCC	20	0.00689964	52.539375	16
GAGGTCG	20	0.0069224336	52.49563	48
TAAACAT	20	0.0069224336	52.49563	5
AATTCTA	20	0.0069224336	52.49563	25