SRR1779985_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779985_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	374105
Sequences flagged as poor quality	0
Sequence length	76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	39711	10.614934309886262	No Hit
CTTATACACATCTGACGCTGCCGACGAATAGAGAGGTGTAGATCTCGGTG	3678	0.9831464428435867	No Hit
CTCTTATACACATCTGACGCTGCCGACGAATAGAGAGGTGTAGATCTCGG	478	0.12777161492094466	No Hit
TCTTATACACATCTGACGCTGCCGACGAATAGAGAGGTGTAGATCTCGGT	429	0.1146736878683792	No Hit
ATACACATCTGACGCTGCCGACGAATAGAGAGGTGTAGATCTCGGTGGTC	382	0.10211037008326539	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCGTC	20	0.00694839	52.5	61
ACTCTCG	20	0.00694839	52.5	28
GCATATG	20	0.00694839	52.5	40
GGCGCCG	30	5.874292E-4	46.666664	29
GCCGTAT	675	0.0	46.14815	54
TCGCCGT	695	0.0	44.316547	52
CGGTGGT	695	0.0	44.316547	46
TGGTCGC	680	0.0	44.264706	49
TCTCGGT	685	0.0	43.941605	43
GTCGCCG	705	0.0	43.687943	51
CGCCGTA	705	0.0	43.687943	53
CTCGGTG	685	0.0	43.430656	44
TCGGTGG	710	0.0	43.380283	45
ATCTCGG	705	0.0	43.191486	42
AGATCTC	715	0.0	43.076923	40
GTAGATC	725	0.0	42.482758	38
GATCTCG	720	0.0	42.291668	41
CGTATCA	740	0.0	42.094593	56
AATCCAG	50	3.4745717E-6	42.000004	5
CCGTATC	760	0.0	40.526314	55