SRR1779985_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779985_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	374105
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCCGT	22464	6.004731292016947	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	6223	1.663436735675813	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCC	3315	0.886114860801112	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCCG	3172	0.847890298178319	No Hit
CTAATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCCGT	1543	0.412451049838949	No Hit
CTTAAACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCCGT	779	0.20823030967241818	No Hit
ATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCCGTCTT	721	0.19272664091632027	TruSeq Adapter, Index 25 (95% over 22bp)
TCTTTATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCC	458	0.12242552224642814	No Hit
CATATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCCGT	411	0.10986220446131433	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGCG	15	0.0022240651	69.99733	33
CGTGGAC	15	0.0022240651	69.99733	43
CACGTAT	15	0.0022240651	69.99733	39
AAAGGTC	15	0.0022240651	69.99733	3
GCCGTAT	15	0.0022240651	69.99733	46
CCTTGAT	15	0.0022240651	69.99733	2
AGGGGGG	3280	0.0	61.35436	70
TGCCGTA	30	8.370987E-6	58.331104	45
GATCATA	25	2.3893962E-4	55.997864	1
ATGGCCG	20	0.00694944	52.497993	11
GTGATAC	20	0.00694944	52.497993	41
CATTCGA	20	0.00694944	52.497993	11
AGCGGCC	20	0.00694944	52.497993	62
ACGTATG	20	0.00694944	52.497993	40
AAGGGGG	3895	0.0	51.39727	69
AGATATC	55	2.2810127E-9	50.907143	33
CGTCTTC	3930	0.0	50.04898	48
GATAACT	35	2.0852223E-5	49.998093	34
AAGCGGA	35	2.0852223E-5	49.998093	45
CGTATGC	4165	0.0	49.83003	41