SRR1779983_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779983_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	278502
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAAACGGTCATCTCGTATGCCGT	17894	6.425088509238713	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	5092	1.8283531177513985	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAAACGGTCATCTCGTATGCC	2774	0.9960431163869559	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAAACGGTCATCTCGTATGCCG	2153	0.7730644663234016	No Hit
CTAATACACATCTCCGAGCCCACGAGACAAACGGTCATCTCGTATGCCGT	997	0.35798665718738104	No Hit
CTTAAACACATCTCCGAGCCCACGAGACAAACGGTCATCTCGTATGCCGT	433	0.15547464650164092	No Hit
ATACACATCTCCGAGCCCACGAGACAAACGGTCATCTCGTATGCCGTCTT	421	0.15116588031683795	Illumina PCR Primer Index 7 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACAAACGGTCATCTCGTATGCC	366	0.13141736863649095	No Hit
CTTATACACATCTCCGAGCCCACGAGACAAACGGTCATCTCGTATGACGT	290	0.10412851613273873	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGTAT	25	2.8353406E-6	70.00001	39
AACTCGT	45	5.456968E-12	70.00001	37
AACGTAT	15	0.0022231298	70.0	39
TCCGCAC	15	0.0022231298	70.0	36
TGACGAC	15	0.0022231298	70.0	45
TTGTTCT	15	0.0022231298	70.0	49
ATACGAT	15	0.0022231298	70.0	37
CAACTCG	65	0.0	64.61539	36
AGGGGGG	2430	0.0	61.646095	70
ACGTATG	120	0.0	61.25	40
ATATCGT	35	2.9677358E-7	60.0	37
CACGGTC	25	2.3878817E-4	56.000004	30
ACGTTAG	25	2.3878817E-4	56.000004	70
CGTCTAC	25	2.3878817E-4	56.000004	48
CGATCCT	25	2.3878817E-4	56.000004	70
CGAATGC	45	2.6937414E-8	54.444447	41
CGTATGA	65	3.6379788E-12	53.846153	41
TCGCATT	20	0.0069465362	52.5	27
TTAGCCG	20	0.0069465362	52.5	53
AAAAGCG	20	0.0069465362	52.5	68