SRR1779981_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779981_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	38930
Sequences flagged as poor quality	0
Sequence length	76
%GC	59

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
ATTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGT	11743	30.164397636783974	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	9127	23.44464423323915	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGT	1510	3.878756742871821	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCG	929	2.3863344464423326	No Hit
ATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGTCTT	660	1.6953506293347034	TruSeq Adapter, Index 9 (95% over 21bp)
ATCTTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCC	586	1.5052658618032366	No Hit
ATTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGACGT	311	0.7988697662471101	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCC	296	0.7603390701258669	No Hit
ATTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGA	157	0.4032879527356794	No Hit
ATTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCAGT	131	0.33650141279219115	No Hit
ATATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGTC	115	0.2954020035961983	No Hit
ATTATACACATCACCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGT	98	0.251733881325456	No Hit
ATTATACACATCTCCGAGCCCACGAGACGTATTAGGATCTCGTATGCCGT	94	0.24145902902645774	No Hit
CTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGTC	90	0.23118417672745953	No Hit
TCTTAATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCC	87	0.2234780375032109	No Hit
ATTATACACATCTCCGAGCCCACGAGACGTATTCGGATATCGTATGCCGT	80	0.20549704597996404	No Hit
ATTATACACATCTCCGAGCCCACGAGACGTAATCGGATCTCGTATGCCGT	79	0.20292833290521448	No Hit
TATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGTCT	70	0.17980991523246853	No Hit
ATTATACACATCTCCGAGCCCACGAGACGAATTCGGATCTCGTATGCCGT	64	0.16439763678397123	No Hit
TTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGTC	63	0.16182892370922167	No Hit
TATTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCG	55	0.14127921911122526	No Hit
AATATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGT	53	0.13614179296172618	No Hit
ATTATACACATCTCCGAGCCAACGAGACGTATTCGGATCTCGTATGCCGT	52	0.13357307988697661	No Hit
CTTTACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGTC	52	0.13357307988697661	No Hit
ATTATACACATCTCCGAGCCCACGAGACGTATACGGATCTCGTATGCCGT	46	0.11816080143847933	No Hit
ATTATACACATCTCCGAGACCACGAGACGTATTCGGATCTCGTATGCCGT	41	0.10531723606473156	No Hit
ATTATAAACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGT	41	0.10531723606473156	No Hit
ATTATACACAACTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGT	41	0.10531723606473156	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTATTAGGATCTCGTATGCCGT	40	0.10274852298998202	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAATTCG	20	7.7879624E-5	70.081085	29
GTAATCG	35	3.5561243E-9	70.081085	29
CGAATTC	25	2.7705173E-6	70.08108	28
AGAGACG	15	0.0021985976	70.08108	23
GACGAAT	30	9.904943E-8	70.08108	26
ACTCGTA	20	7.837858E-5	69.991005	38
TGATTGA	35	3.592504E-9	69.991005	55
CTGATTG	20	7.837858E-5	69.991005	54
TCGGAAC	25	2.7918304E-6	69.991005	33
GATTGAA	35	3.592504E-9	69.991005	56
AACTCGT	20	7.837858E-5	69.991005	37
CGGAACT	25	2.7918304E-6	69.991005	34
TCTCGAA	20	7.837858E-5	69.991005	38
GAACTCG	20	7.837858E-5	69.991005	36
ATCGGAT	35	3.592504E-9	69.991005	32
ATTGAAA	40	1.2914825E-10	69.991005	57
GGAACTC	25	2.7918304E-6	69.991005	35
AATCGGA	40	1.2914825E-10	69.991005	31
CTTCTGA	20	7.837858E-5	69.991005	51
TTCGGAA	20	7.837858E-5	69.991005	32

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content