SRR1779979_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779979_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	489145
Sequences flagged as poor quality	0
Sequence length	76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	48734	9.96309887661123	No Hit
CTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGTG	8273	1.6913185251816947	No Hit
ATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGTGGTC	1175	0.24021506915127416	No Hit
CTCTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGG	1136	0.2322419732390191	No Hit
TCTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGT	878	0.17949687720410104	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGCGC	20	7.928026E-5	69.99294	3
AGTCGCT	15	0.0022250277	69.99294	2
CGACGTA	20	0.006949621	52.50008	53
GCCGTAT	1355	0.0	45.20302	54
CTCGGTG	1380	0.0	44.63775	44
CGTATCA	1415	0.0	44.523037	56
CGGTGGT	1425	0.0	44.456207	46
TCGGTGG	1410	0.0	44.43269	45
TCGCCGT	1385	0.0	43.718475	52
GTATCAT	1435	0.0	43.6586	57
TCTCGGT	1405	0.0	43.594368	43
TGGTCGC	1415	0.0	43.286285	49
GATCTCG	1430	0.0	43.07699	41
TAGATCT	1440	0.0	43.020897	39
ATCTCGG	1430	0.0	42.832233	42
GTCGCCG	1420	0.0	42.39443	51
CGCCGTA	1430	0.0	42.34272	53
AGATCTC	1470	0.0	42.142918	40
GTAGATC	1475	0.0	42.00006	38
GTGGTCG	1510	0.0	41.721912	48