SRR1779979_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779979_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	489145
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCGGCCAATATCTCGTATGCCGT	17400	3.5572274070061027	Illumina PCR Primer Index 6 (95% over 21bp)
ATTATACACATCTCCGAGCCCACGAGACCGGCCAATATCTCGTATGCCGT	15018	3.0702552412883706	Illumina PCR Primer Index 6 (95% over 21bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	14515	2.9674227478559527	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCGGCCAATATCTCGTATGCCG	3378	0.6905927690153226	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCGGCCAATATCTCGTATGCC	2058	0.4207341381389977	No Hit
ATCTTATACACATCTCCGAGCCCACGAGACCGGCCAATATCTCGTATGCC	1769	0.3616514530456204	No Hit
ATACACATCTCCGAGCCCACGAGACCGGCCAATATCTCGTATGCCGTCTT	1043	0.21322920606364165	Illumina PCR Primer Index 6 (95% over 24bp)
TCTTTATACACATCTCCGAGCCCACGAGACCGGCCAATATCTCGTATGCC	608	0.1242985208884891	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGTCGTT	15	0.0022250917	69.99244	2
TGCCGTA	45	3.8562575E-10	62.2155	45
AGGGGGG	4005	0.0	61.61013	70
ATTATAC	2075	0.0	60.21036	1
CACGTAT	30	8.378291E-6	58.32703	39
CAGTCGT	25	2.3909511E-4	55.993946	1
AACTCGT	45	2.701563E-8	54.43856	37
CCTAGCG	20	0.006952632	52.494324	2
GCCGTAT	40	7.4810123E-7	52.494324	46
TATGCCG	4925	0.0	52.369976	43
CGTATGC	4940	0.0	52.2818	41
TCGTATG	5035	0.0	52.198925	40
CCGTCTT	4740	0.0	52.051334	47
CGTCTTC	4810	0.0	52.026722	48
ATGCCGT	4965	0.0	51.94806	44
GCCGTCT	4790	0.0	51.94637	46
CTCGTAT	5040	0.0	51.93883	39
GTATGCC	4995	0.0	51.91631	42
TCTCGTA	5095	0.0	51.790283	38
TGCCGTC	4940	0.0	51.644215	45