SRR1779978_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779978_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	309062
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGT	16003	5.177925464793471	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	14835	4.800007765432179	No Hit
ATTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGT	13277	4.295901793167714	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCG	3030	0.9803858125554096	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCC	1725	0.558140437840951	No Hit
ATCTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCC	1343	0.4345406423306651	No Hit
ATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGTCTT	755	0.24428755395357565	RNA PCR Primer, Index 37 (95% over 22bp)
TCTTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCC	593	0.19187088674764285	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCATATA	15	0.00222277	70.00469	1
TCGGGCA	15	0.002224197	69.99337	49
TGCCGAC	30	1.0224721E-7	69.99337	45
AAGCCGT	50	1.4551915E-11	62.99403	44
AGGGGGG	3670	0.0	62.2693	70
ATTATAC	1905	0.0	60.817722	1
AGCGTCA	25	2.389412E-4	55.994694	3
GCCGACA	25	2.389412E-4	55.994694	46
CGTCTTA	90	0.0	54.439285	48
CCGTCTT	4285	0.0	53.413845	47
GCCGTCT	4270	0.0	53.3556	46
CGTCTTC	4275	0.0	53.12947	48
CGTATGC	4505	0.0	53.058235	41
TCTTCTG	4205	0.0	53.015186	50
TATGCCG	4490	0.0	53.00166	43
GTCTTCT	4210	0.0	52.952225	49
CTCGTAT	4555	0.0	52.936806	39
TCGTATG	4570	0.0	52.916206	40
GTATGCC	4505	0.0	52.902866	42
ATCTCGT	4585	0.0	52.819424	37