SRR1779977_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779977_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	232090
Sequences flagged as poor quality	0
Sequence length	76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	36837	15.871860054289286	No Hit
CTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGTG	7490	3.227196346244991	No Hit
CTCTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGG	1200	0.5170408031367142	No Hit
ATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGTGGTC	819	0.35288034814080743	No Hit
TCTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGT	801	0.3451247360937567	No Hit
TCTTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGG	281	0.12107372140118058	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGCGG	15	0.002222851	69.9985	51
AGACCGC	20	0.006939756	52.51018	17
CAAGTTC	20	0.0069456743	52.498867	34
GGGCTCG	20	0.0069456743	52.498867	6
GCGCGTC	20	0.0069456743	52.498867	6
AACCCGC	20	0.0069456743	52.498867	31
ACTAGTG	20	0.0069456743	52.498867	32
CCGTAAT	20	0.0069456743	52.498867	37
CGTAATA	20	0.0069456743	52.498867	38
CGCGTCT	20	0.0069456743	52.498867	7
GTGCGTG	20	0.0069456743	52.498867	27
TGCACGT	20	0.0069456743	52.498867	5
GGCTCGC	20	0.0069456743	52.498867	7
ACGAATA	20	0.0069456743	52.498867	21
GTTGTGC	30	5.8702775E-4	46.665665	1
ATTGACA	30	5.8702775E-4	46.665665	45
GTATCAT	1290	0.0	41.239418	57
GCCGTAT	1265	0.0	41.22441	54
CGTATCA	1280	0.0	41.01474	56
TGGTCGC	1275	0.0	40.90108	49