SRR1779975_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779975_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	553537
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATTATACACATCTCCGAGCCCACGAGACTAACAACAATCTCGTATGCCGT	24144	4.361768048025697	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	18968	3.426690537398584	No Hit
CTTATACACATCTCCGAGCCCACGAGACTAACAACAATCTCGTATGCCGT	12168	2.198227038120306	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTAACAACAATCTCGTATGCCG	2995	0.5410659088733003	No Hit
ATCTTATACACATCTCCGAGCCCACGAGACTAACAACAATCTCGTATGCC	2223	0.40159917042582516	No Hit
ATACACATCTCCGAGCCCACGAGACTAACAACAATCTCGTATGCCGTCTT	1380	0.2493058277947093	RNA PCR Primer, Index 36 (95% over 23bp)
CTCTTATACACATCTCCGAGCCCACGAGACTAACAACAATCTCGTATGCC	826	0.1492221838829202	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACTAACAACAATCTCGTATGCC	710	0.12826604183640838	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCAAG	15	0.0022237466	70.00433	29
ATTATAC	3360	0.0	62.810715	1
AGGGGGG	4185	0.0	60.213345	70
CGTATGA	155	0.0	56.450012	41
CCGTCTT	5335	0.0	53.53175	47
TATGCCG	5620	0.0	53.370365	43
GCCGTCT	5435	0.0	53.255157	46
CGTCTTC	5455	0.0	53.188225	48
CTCGTAT	5720	0.0	53.049194	39
ATGCCGT	5580	0.0	52.937565	44
TCGTATG	5820	0.0	52.859325	40
ATCTCGT	5640	0.0	52.746727	37
TCTCGTA	5690	0.0	52.71379	38
CGTATGC	5745	0.0	52.696503	41
GTATGCC	5700	0.0	52.62131	42
TGCCGTC	5590	0.0	52.592426	45
CGACGTA	20	0.006950922	52.498512	6
CGTCTTA	60	8.367351E-11	52.498512	48
ACGACGT	20	0.006950922	52.498512	5
AATCTCG	5700	0.0	52.1915	36