SRR1779974_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779974_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	114495
Sequences flagged as poor quality	0
Sequence length	76
%GC	69

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	45444	39.69081619284685	No Hit
CTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGTG	8808	7.692912354251277	No Hit
ATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGTGGTC	1045	0.9127036115114198	No Hit
TCTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGT	1019	0.8899951962967815	No Hit
CTCTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGG	872	0.7616053102755579	No Hit
TCTTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGG	297	0.25939997379798246	No Hit
CTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGTGG	245	0.21398314336870608	No Hit
TATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGTGGT	174	0.15197170182104022	No Hit
TCTTAATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGG	126	0.1100484737324774	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTGCAG	15	0.0022163135	70.027534	32
GTGTCGG	25	2.8254035E-6	69.99695	42
CCTTCAA	20	7.8999095E-5	69.99694	15
TGTGCGC	15	0.00222016	69.99694	3
CTAACTT	15	0.00222016	69.99694	21
CCGTATT	15	0.00222016	69.99694	60
CCAAGAG	20	7.8999095E-5	69.99694	8
GACGATC	15	0.00222016	69.99694	23
GCTAACT	15	0.00222016	69.99694	20
CCGTTGG	15	0.00222016	69.99694	1
AGAGCCT	20	7.8999095E-5	69.99694	11
CTGGGGG	35	2.9530747E-7	59.997375	18
GGTGTCG	30	8.334338E-6	58.330788	41
CAAGTGT	25	2.377292E-4	56.022026	33
AAGTTGC	25	2.377292E-4	56.022026	32
TACTTAA	25	2.3824343E-4	55.997555	41
AACTTAG	25	2.3824343E-4	55.997555	23
CTAAGGA	25	2.3824343E-4	55.997555	60
ATACTTA	25	2.3824343E-4	55.997555	40
TCGGCGG	25	2.3824343E-4	55.997555	52