SRR1779973_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779973_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	327932
Sequences flagged as poor quality	0
Sequence length	76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	49836	15.197053047583037	No Hit
CTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGTG	9980	3.0433138577509973	No Hit
ATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGTGGTC	1477	0.45039825329641514	No Hit
CTCTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGG	1240	0.37812717270653673	No Hit
TCTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGT	1035	0.31561421270263346	No Hit
TCTTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGG	388	0.11831721210494858	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCTGAT	15	0.0022226756	70.00641	35
CACCGGA	15	0.0022226756	70.00641	16
GTGAACG	15	0.0022226756	70.00641	49
GAACGGT	20	7.9165926E-5	70.0064	34
GGACGGT	15	0.0022240204	69.995735	11
CCGCGGA	15	0.0022240204	69.995735	9
TTCGTCG	20	7.922576E-5	69.99573	20
CGCCTTG	20	7.922576E-5	69.99573	25
TCGTCGC	20	7.922576E-5	69.99573	21
GGTGCGT	25	2.3874291E-4	56.005127	13
TGCGTTT	25	2.3874291E-4	56.005127	15
CGACGTA	20	0.0069451155	52.504803	53
TGTACCA	20	0.0069451155	52.504803	38
TCTCTAG	20	0.0069493055	52.496796	58
CGGTGTT	20	0.0069493055	52.496796	9
ATTGCGG	20	0.0069493055	52.496796	5
GTTGGCG	20	0.0069493055	52.496796	31
GCCGTAT	1630	0.0	47.236385	54
TGGTCGC	1665	0.0	46.881165	49
GGCAGCG	30	5.87499E-4	46.663822	58