SRR1779971_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779971_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	367057
Sequences flagged as poor quality	0
Sequence length	76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	41235	11.233950040456932	No Hit
CTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGTG	7575	2.0637121754931798	No Hit
ATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGTGGTC	1072	0.2920527329542823	No Hit
TCTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGT	943	0.256908327589448	No Hit
CTCTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGG	913	0.2487352100627423	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAACTTC	15	0.0022233683	70.002594	22
GTCTCGG	20	0.00694727	52.50194	42
TAGCGAG	30	5.873074E-4	46.668392	28
GTCGCCG	1355	0.0	43.91306	51
GCCGTAT	1335	0.0	43.78439	54
GATCTCG	1360	0.0	43.751617	41
TCGCCGT	1340	0.0	43.621014	52
AGATCTC	1360	0.0	43.494255	40
CGGTGGT	1370	0.0	43.432266	46
CTCGGTG	1375	0.0	43.27433	44
TCGGTGG	1375	0.0	43.268433	45
TGGTCGC	1360	0.0	43.236893	49
ATCTCGG	1380	0.0	43.117535	42
TCTCGGT	1390	0.0	42.80734	43
TAGATCT	1395	0.0	42.403	39
GTAGATC	1400	0.0	42.251564	38
CGCCGTA	1380	0.0	42.103004	53
CGTATCA	1415	0.0	41.80367	56
CCGTATC	1420	0.0	41.40998	55
GGTGGTC	1455	0.0	41.135544	47