SRR1779971_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779971_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	367057
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	13242	3.6076140762878786	No Hit
CTTATACACATCTCCGAGCCCACGAGACAAACGGTCATCTCGTATGCCGT	12460	3.394568146091751	No Hit
ATTATACACATCTCCGAGCCCACGAGACAAACGGTCATCTCGTATGCCGT	12217	3.3283658941254353	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAAACGGTCATCTCGTATGCCG	2268	0.617887685018948	No Hit
ATCTTATACACATCTCCGAGCCCACGAGACAAACGGTCATCTCGTATGCC	1280	0.3487196811394416	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAAACGGTCATCTCGTATGCC	1233	0.3359151303476027	No Hit
ATACACATCTCCGAGCCCACGAGACAAACGGTCATCTCGTATGCCGTCTT	513	0.1397603097066668	Illumina PCR Primer Index 7 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACAAACGGTCATCTCGTATGCC	489	0.13322181568530228	No Hit
ATTATACACATCTCCGAGCCCACGAGACAAACGGTCATCTCGTATGACGT	439	0.11959995314079284	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCTCGG	15	0.0022226137	70.00858	28
GGTACGC	15	0.0022238148	69.99905	15
GCGACGG	15	0.0022238148	69.99905	20
TACGCGA	15	0.0022238148	69.99905	17
GACGACA	15	0.0022238148	69.99905	46
ATTATAC	2020	0.0	59.25662	1
AGGGGGG	2695	0.0	59.090103	70
ATCGTAT	30	8.369456E-6	58.332542	39
CGTCTAC	55	3.6379788E-11	57.27195	48
TCTCCGT	25	2.3890471E-4	55.999237	21
CGTATGA	165	0.0	55.150764	41
TCGTATG	3650	0.0	53.985565	40
GCCGTCT	2960	0.0	53.799942	46
GTCTTCT	2385	0.0	53.56321	49
TCTCGTA	3720	0.0	53.440132	38
CTCGTAT	3690	0.0	53.40036	39
TATGCCG	3750	0.0	53.38594	43
CGTATGC	3725	0.0	53.368397	41
TCTTCTG	2410	0.0	53.29803	50
CGTCTTC	2710	0.0	53.209606	48