SRR1779970_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779970_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	543253
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGT	25737	4.737571628688659	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2996	0.5514925826456549	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCG	2608	0.4800709798197157	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCC	2590	0.4767576064927391	No Hit
ATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGTCTT	882	0.1623552930218517	Illumina PCR Primer Index 3 (95% over 21bp)
CATATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGT	661	0.1216744316184172	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCC	584	0.10750055683079524	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGTAT	20	7.927904E-5	69.99457	39
CGTATGA	35	2.9746298E-7	59.995346	41
AGGGGGG	3350	0.0	58.717266	70
GTATGAC	30	8.378021E-6	58.328804	42
GACCTAT	45	2.6977432E-8	54.45024	1
GCCGTCT	3680	0.0	52.971436	46
CCGTCTT	3645	0.0	52.807976	47
CGTCTTC	3650	0.0	52.74049	48
TCGTATG	3775	0.0	52.65817	40
CGTATGC	3760	0.0	52.495922	41
TATGCCG	3730	0.0	52.449017	43
CTCGTAT	3780	0.0	52.310753	39
TCTCGTA	3855	0.0	51.74696	38
ATGCCGT	3790	0.0	51.71103	44
CTTGAAA	3805	0.0	51.69589	57
TGCCGTC	3785	0.0	51.686874	45
TCTTCTG	3705	0.0	51.57969	50
GTATGCC	3800	0.0	51.574944	42
ATCTCGT	3875	0.0	51.570198	37
AAGGGGG	3805	0.0	51.511917	69