SRR1779968_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779968_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1648935
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGT	14025	0.850548990712187	No Hit
TCTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCG	1730	0.10491620348891861	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCC	1708	0.10358200899368379	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	2320	46.763313	43
TCGTATG	2410	46.61434	40
CGTATGC	2380	46.172592	41
ATGCCGT	2375	45.680374	44
GCCGTCT	2365	45.42959	46
CTCGTAT	2435	45.417126	39
CGTCTTC	2380	44.997585	48
CCGTCTT	2365	44.83631	47
TGCCGTC	2455	43.9067	45
GTATGCC	2490	43.570633	42
AGGGGGG	2575	42.814533	70
TCTCGTA	2605	42.318897	38
ATCTCGT	2650	41.468212	37
GTCTTCT	2695	39.86799	49
AAGGGGG	2765	39.619324	69
AATCTCG	2830	39.325314	36
CTTGAAA	2870	38.29179	57
CTGCTTG	2815	38.04529	54
TGCTTGA	3090	35.112446	55
AAAGGGG	3120	35.11136	68