SRR1779965_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779965_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	335626
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCCGT	21001	6.257262548193525	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCCG	2308	0.6876702043345867	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2281	0.6796255355663745	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCC	2044	0.6090112208231782	No Hit
ATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCCGTCTT	739	0.22018556369292008	Illumina PCR Primer Index 11 (95% over 22bp)
CTTATACACATCTCCGAGCCCACGAGACGCCGCTCCATCTCGTATGCCGT	646	0.19247614904685573	No Hit
CATATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCCGT	581	0.17310935386412254	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCC	387	0.11530691901104205	No Hit
CTAATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCCGT	372	0.11083765858425748	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATAT	15	0.0022235846	69.99955	66
GGACCTA	15	0.0022248991	69.98912	1
GTGCGGA	15	0.0022248991	69.98912	11
AGGGGGG	2835	0.0	60.616898	70
TGAGTCG	25	2.3886653E-4	55.99964	66
ATCGTAT	25	2.3904248E-4	55.991295	39
ATATCGT	25	2.3904248E-4	55.991295	37
CCGACTT	25	2.3904248E-4	55.991295	47
AACGTAT	20	0.006943851	52.50749	64
ACGTATA	20	0.006943851	52.50749	65
CCATTGA	20	0.006947945	52.499664	15
CCGTCTT	3300	0.0	51.749535	47
CGTCTTC	3355	0.0	51.430374	48
GCCGTCT	3330	0.0	51.388412	46
AAGGGGG	3345	0.0	51.374855	69
TCTTCTG	3360	0.0	51.35384	50
TATGCCG	3370	0.0	51.297665	43
TCGTATG	3420	0.0	51.16164	40
CGTATGC	3400	0.0	51.153816	41
GTCTTCT	3395	0.0	51.0306	49