SRR1779964_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779964_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	175169
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGT	17173	9.803675307845566	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2211	1.2622096375500231	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCC	1882	1.074391016675325	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCG	1748	0.9978934628844145	No Hit
ATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGTCTT	651	0.37164110087972185	TruSeq Adapter, Index 9 (95% over 21bp)
CATATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGT	602	0.3436681147920009	No Hit
CTAATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGT	384	0.21921687056499725	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCC	354	0.20209055255210684	No Hit
CTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGTC	239	0.13643966683602693	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATACG	15	0.00222049	70.00999	30
ACAATAC	15	0.0022230067	69.990005	3
CGTAATC	15	0.0022230067	69.990005	48
AGGGGGG	2330	0.0	61.429	70
CGTCTAC	30	8.357665E-6	58.32501	48
ATGACGT	70	0.0	54.992153	44
AAGGGGG	2655	0.0	53.777634	69
TCGGAGT	20	0.0069304975	52.52249	65
TGCGATT	20	0.006938332	52.507492	17
TTGCGAT	20	0.006938332	52.507492	16
AATGGAC	20	0.0069461735	52.492504	34
TATGACG	80	0.0	52.492504	43
ATATCGT	40	7.4549826E-7	52.492504	37
GCTTATC	20	0.0069461735	52.492504	11
AACTCCG	40	7.4549826E-7	52.492504	10
ACTCCGA	40	7.4549826E-7	52.492504	11
TATCGTA	40	7.4549826E-7	52.492504	38
AGATCTC	2770	0.0	51.79766	35
ATCTCGT	2810	0.0	51.558475	37
GATCTCG	2810	0.0	51.43394	36