SRR1779963_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779963_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	217939
Sequences flagged as poor quality	0
Sequence length	76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGT	22311	10.23726822643033	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2772	1.271915535998605	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCG	2309	1.0594707693437155	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCC	2124	0.9745846314794507	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCC	477	0.2188685824932665	No Hit
CATATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGT	453	0.2078563267703348	No Hit
ATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGTCTT	442	0.20280904289732446	TruSeq Adapter, Index 2 (95% over 21bp)
CTAATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGT	260	0.11929943699842617	No Hit
CTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGACGT	235	0.10782833728703904	No Hit
CTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGTC	234	0.10736949329858356	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCCGTA	60	0.0	70.006195	45
TTTGCGA	15	0.0022237217	69.99013	54
AGGGGGG	2730	0.0	65.262184	70
GCCGTAT	55	3.6379788E-11	57.277798	46
CCGTCTT	2950	0.0	56.479572	47
CTGCTTG	2730	0.0	56.402306	54
CGTCTTC	2940	0.0	55.944496	48
GCCGTCT	2985	0.0	55.934597	46
TGCTTGA	2830	0.0	55.89318	55
GTCTTCT	2820	0.0	55.84319	49
TCTGCTT	2765	0.0	55.688354	53
TATGCCG	3295	0.0	55.558784	43
ATGCCGT	3295	0.0	55.452553	44
AAGGGGG	3205	0.0	55.371517	69
CTTGAAA	3045	0.0	55.27956	57
TCGTATG	3320	0.0	55.245853	40
TTCTGCT	2680	0.0	55.23475	52
TGCCGTC	3240	0.0	55.2055	45
CGTATGC	3255	0.0	55.058636	41
GCTTGAA	3065	0.0	54.6905	56