SRR1779962_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779962_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	252521
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCCGT	17823	7.058026857172275	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCC	2133	0.8446822244486597	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1997	0.7908253174983467	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCCG	1820	0.7207321371291893	No Hit
ATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCCGTCTT	659	0.2609683947077669	No Hit
CATATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCCGT	474	0.18770716098859105	RNA PCR Primer, Index 19 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCC	378	0.14969052078837006	No Hit
CTAATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCCGT	301	0.11919800729444283	RNA PCR Primer, Index 19 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	2125	0.0	61.59477	70
CGCGTAA	35	2.964298E-7	60.00679	28
AAGCCGT	35	2.9683542E-7	59.994907	44
ACGCGTA	45	2.6899215E-8	54.450607	27
TATGCCG	2500	0.0	53.895424	43
CGTATGC	2540	0.0	53.87338	41
GCCGTCT	2470	0.0	53.841583	46
CCGTCTT	2465	0.0	53.524868	47
CGTCTTC	2475	0.0	53.45001	48
TCTTCTG	2485	0.0	53.37575	50
CTCGTAT	2560	0.0	53.31579	39
TCGTATG	2570	0.0	53.24451	40
GTATGCC	2535	0.0	53.15131	42
TCTCGTA	2590	0.0	53.1036	38
GTCTTCT	2510	0.0	52.84412	49
ATGCCGT	2530	0.0	52.841366	44
TGCCGTC	2520	0.0	52.7733	45
CTGCTTG	2540	0.0	52.77111	54
CTTGAAA	2585	0.0	52.664776	57
AGCCGTC	40	7.465278E-7	52.495544	45