SRR1779961_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779961_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	349161
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCCAAATAAATCTCGTATGCCGT	28623	8.197650940397123	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	3091	0.8852649637273349	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCCAAATAAATCTCGTATGCCG	2871	0.8222567812556385	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCCAAATAAATCTCGTATGCC	2478	0.7097012552948354	No Hit
ATACACATCTCCGAGCCCACGAGACCCAAATAAATCTCGTATGCCGTCTT	955	0.2735127920930459	No Hit
CATATACACATCTCCGAGCCCACGAGACCCAAATAAATCTCGTATGCCGT	767	0.2196694361626871	No Hit
CTAATACACATCTCCGAGCCCACGAGACCCAAATAAATCTCGTATGCCGT	540	0.15465644788507307	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCCAAATAAATCTCGTATGCC	509	0.14577802217315222	No Hit
CTTATACACATCTCCGAGCCCACGAGACACAAATAAATCTCGTATGCCGT	371	0.10625470771363353	No Hit
CTATACACATCTCCGAGCCCACGAGACCCAAATAAATCTCGTATGCCGTC	365	0.10453630273713273	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACTCGT	20	7.92154E-5	69.998856	37
AGGGGGG	3595	0.0	62.599808	70
AAGGGGG	4260	0.0	52.745617	69
CGTATGC	4400	0.0	52.737774	41
TCGTATG	4400	0.0	52.737774	40
CTCGTAT	4370	0.0	52.619274	39
CGTCTTC	4295	0.0	52.560257	48
GCCGTCT	4290	0.0	52.539932	46
CAGACGT	20	0.006944518	52.50666	1
CGTTGCG	20	0.006948453	52.499146	27
TCGAAAG	20	0.006948453	52.499146	40
TATGCCG	4375	0.0	52.479137	43
CCGTCTT	4265	0.0	52.43759	47
CTTGAAA	4410	0.0	52.380093	57
TCTCGTA	4400	0.0	52.180965	38
TCTTCTG	4340	0.0	52.176567	50
GTATGCC	4395	0.0	52.160694	42
ATCTCGT	4380	0.0	52.099606	37
GTCTTCT	4365	0.0	52.038094	49
TTGAAAA	4485	0.0	51.89436	58