SRR1779959_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779959_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	212076
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCGT	28589	13.480544710386845	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	3169	1.4942756370357797	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCG	2989	1.4094004036288879	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCC	2319	1.093475923725457	No Hit
ATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCGTCTT	929	0.4380505101944586	RNA PCR Primer, Index 19 (95% over 23bp)
CATATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCGT	890	0.419660876289632	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCC	642	0.3027216658179143	No Hit
CTAATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCGT	589	0.2777306248703295	No Hit
CTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCGTC	330	0.15560459457930176	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGCTA	15	0.0022205254	70.01486	67
TAACGGA	15	0.0022205254	70.01486	67
AATATCG	20	7.914662E-5	69.99835	36
AACTCGT	20	7.914662E-5	69.99835	37
TATAAGC	15	0.0022226037	69.99835	33
GCCGTAT	25	2.8334034E-6	69.998344	46
AGGGGGG	3625	0.0	65.17088	70
CGTCTAC	40	1.0617441E-8	61.248558	48
CGAATGC	40	1.0617441E-8	61.248558	41
CGTCTTA	25	2.3868562E-4	55.998676	48
AACGGAG	25	2.3868562E-4	55.998676	68
TGCCGTA	25	2.3868562E-4	55.998676	45
AAGGGGG	4210	0.0	55.865665	69
CGTATGC	4465	0.0	55.105083	41
GCCGTCT	4370	0.0	55.101677	46
TATGCCG	4415	0.0	55.094963	43
TCGTATG	4530	0.0	55.086998	40
CCGTCTT	4335	0.0	55.062138	47
ATGCCGT	4420	0.0	55.03264	44
CGTATGA	70	0.0	54.998703	41