SRR1779958_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779958_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	80086
Sequences flagged as poor quality	0
Sequence length	76
%GC	76

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	40917	51.09132682366456	No Hit
CTTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGGTG	5778	7.214744150038708	No Hit
ATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGGTGGTC	650	0.8116275004370301	No Hit
TCTTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGGT	650	0.8116275004370301	No Hit
CTCTTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGG	636	0.7941462927353096	No Hit
TCTTTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGG	162	0.2022825462627675	No Hit
CTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGGTGG	152	0.18979596933296705	No Hit
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	86	0.10738456159628398	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGAAAT	20	7.883713E-5	70.00001	19
TGTATAT	20	7.883713E-5	70.00001	37
TTAAGGT	15	0.0022173298	70.00001	49
CGAATCA	15	0.0022173298	70.00001	56
GTATATC	20	7.883713E-5	70.00001	38
CCGAATC	15	0.0022173298	70.00001	55
CTTTACA	15	0.0022173298	70.00001	1
TCTCTGT	30	8.309384E-6	58.333336	45
TATATCT	25	2.3775769E-4	56.000004	39
ATTTAAG	20	0.0069285505	52.500004	47
GGAACCA	20	0.0069285505	52.500004	21
TTTATTC	20	0.0069285505	52.500004	53
TAAGGTC	20	0.0069285505	52.500004	50
TCTGGAT	20	0.0069285505	52.500004	1
CAGACGC	20	0.0069285505	52.500004	55
TTTATAC	35	2.0699514E-5	50.000004	3
TCATTAA	1045	0.0	48.229668	60
ATCATTA	1045	0.0	48.229668	59
GTATCAT	1040	0.0	48.125004	57
GCCGTAT	1045	0.0	47.894737	54