SRR1779957_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779957_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	329994
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCCGT	18946	5.741316508785008	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	5364	1.6254840997109037	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCCG	2364	0.7163766613938435	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCC	2245	0.6803153996739334	No Hit
ATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCCGTCTT	746	0.22606471632817568	RNA PCR Primer, Index 34 (95% over 23bp)
CATATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCCGT	743	0.2251556088898586	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCC	449	0.1360630799347867	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTGCGG	15	0.0022234754	70.00015	39
CGAATGC	30	1.0219992E-7	70.00015	41
AACTCGA	20	7.920168E-5	70.00015	37
AGGGGGG	2350	0.0	58.532043	70
GGACCTA	25	2.3867167E-4	56.00861	1
CAGATCT	20	0.0069434424	52.50807	4
CACTCGC	20	0.0069476063	52.500114	44
GCCGTCT	2750	0.0	52.054657	46
CCGTCTT	2745	0.0	52.02197	47
CGTCTTC	2835	0.0	51.96755	48
TATGCCG	2815	0.0	51.474354	43
ATCTCGT	2890	0.0	51.4707	37
CGTATGC	2830	0.0	51.44887	41
TCTCGTA	2900	0.0	51.413906	38
TCGTATG	2900	0.0	51.413906	40
CTCGTAT	2880	0.0	51.284832	39
GTCTTCT	2850	0.0	51.202877	49
ATGCCGT	2870	0.0	50.97572	44
CTTGAAA	2830	0.0	50.94645	57
TCTTCTG	2860	0.0	50.901485	50