SRR1779956_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779956_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	298904
Sequences flagged as poor quality	0
Sequence length	76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	32363	10.827222118138264	No Hit
CTTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGGTG	3324	1.1120627358616813	No Hit
ATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGGTGGTC	590	0.19738779005968474	No Hit
CTCTTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGG	517	0.1729652329845034	No Hit
TCTTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGGT	351	0.11742900730669378	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGTGCT	20	0.0069451905	52.503513	36
CCGTGCG	20	0.006949788	52.49473	10
CAGTAGT	35	2.084973E-5	49.994984	1
CGGTGGT	670	0.0	41.79384	46
GCCGTAT	670	0.0	41.78685	54
TCGGTGG	660	0.0	41.366405	45
CTCGGTG	665	0.0	41.05538	44
TCGCCGT	670	0.0	40.748993	52
TGGTCGC	675	0.0	40.44715	49
CGCTTAG	35	0.0012538659	40.002674	19
CAGTTGT	35	0.001254898	39.995987	1
GTCGCCG	685	0.0	39.85668	51
AGATCTC	695	0.0	39.786835	40
ATCTCGG	695	0.0	39.283203	42
CGTATCA	705	0.0	39.222485	56
TCTCGGT	700	0.0	39.00261	43
CGCCGTA	700	0.0	39.00261	53
CCGTATC	710	0.0	38.946266	55
GATCTCG	710	0.0	38.946266	41
GTAGATC	730	0.0	38.83822	38