SRR1779955_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779955_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	145497
Sequences flagged as poor quality	0
Sequence length	76
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCCGT	23563	16.194835632349807	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	6681	4.591847254582569	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCCG	2536	1.742991264424696	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCC	1982	1.3622273998776606	No Hit
CATATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCCGT	875	0.6013869701780793	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCC	508	0.3491480924005306	No Hit
ATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCCGTCTT	497	0.34158779906114906	RNA PCR Primer, Index 14 (95% over 21bp)
CTATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCCGTC	266	0.18282163893413608	No Hit
ATTATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCCGT	212	0.1457074716317175	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACCGA	15	0.0022230663	69.9835	11
ATTCGCC	15	0.0022230663	69.9835	45
ATGTCGC	15	0.0022230663	69.9835	37
ATCGTAT	30	1.0196709E-7	69.9835	39
ATATCGT	35	3.6907295E-9	69.9835	37
AGGGGGG	2880	0.0	64.65977	70
AAGGGGG	3320	0.0	56.090397	69
TTCTAAG	25	2.3868543E-4	55.9868	66
CAGAGCT	25	2.3868543E-4	55.9868	18
GTCTTCT	3350	0.0	54.961163	49
TCTTCTG	3360	0.0	54.901764	50
CCGTCTT	3430	0.0	54.885017	47
GCCGTCT	3465	0.0	54.73457	46
TTCTGCT	3315	0.0	54.696712	52
CGTCTTC	3405	0.0	54.690197	48
ATGCCGT	3520	0.0	54.5752	44
GTTACCA	45	2.6793714E-8	54.45033	31
CTTCTGC	3375	0.0	54.45033	51
TATGCCG	3530	0.0	54.420593	43
TGCCGTC	3520	0.0	54.376385	45