SRR1779951_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779951_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	214457
Sequences flagged as poor quality	0
Sequence length	76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	33585	15.660482054677626	No Hit
CTTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGGTG	4319	2.013923537119329	No Hit
ATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGGTGGTC	674	0.31428211716101595	No Hit
CTCTTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGG	659	0.307287708025385	No Hit
TCTTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGGT	481	0.2242873862825648	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAGAGA	20	0.0069443667	52.5	24
GCCTTTG	20	0.0069443667	52.5	7
CTCGACC	20	0.0069443667	52.5	13
GGTATTT	35	2.081746E-5	50.0	1
TCGCCGT	755	0.0	45.89404	52
GCCGTAT	765	0.0	45.751637	54
CGGTGGT	770	0.0	45.454548	46
TGGTCGC	770	0.0	45.454548	49
GTCGCCG	775	0.0	45.16129	51
TCGGTGG	760	0.0	45.131577	45
GTGGTCG	780	0.0	44.871796	48
CGTATCA	785	0.0	44.585987	56
CTCGGTG	765	0.0	44.379086	44
GTATCAT	790	0.0	44.3038	57
CGCCGTA	790	0.0	43.86076	53
GATATTA	40	4.5822526E-5	43.75	1
TCTCGGT	790	0.0	43.417725	43
CCGTATC	810	0.0	43.20988	55
GGTGGTC	810	0.0	43.20988	47
ATCTCGG	790	0.0	42.974686	42