SRR1779951_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779951_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	214457
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGT	22084	10.297635423418214	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	7500	3.4972045678154595	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCC	2572	1.199308019789515	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCG	2264	1.0556894855378933	No Hit
CATATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGT	694	0.32360799600852386	No Hit
ATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGTCTT	644	0.30029329888975415	TruSeq Adapter, Index 2 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCC	442	0.2061019225299244	No Hit
CTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGTC	271	0.12636565838373193	No Hit
CTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTAGTATGCCGT	220	0.10258466732258681	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	2490	0.0	60.580715	70
AACTCGT	35	2.9650255E-7	59.9984	37
TAACTCG	35	2.9650255E-7	59.9984	36
AGCCGTC	60	1.8189894E-12	58.33178	45
AATCTCG	30	8.358287E-6	58.33178	36
CTTTATA	65	3.6379788E-12	53.84472	2
CTGCTGA	20	0.0069450997	52.4986	36
TGGACAC	20	0.0069450997	52.4986	65
CTGCACG	20	0.0069450997	52.4986	9
CTCGCTG	20	0.0069450997	52.4986	41
TTAAACG	20	0.0069450997	52.4986	14
TATGTCG	20	0.0069450997	52.4986	32
GCCGTCT	2960	0.0	51.78916	46
CCGTCTT	2950	0.0	51.727436	47
CGTCTTC	2865	0.0	51.67402	48
TCTTCTG	2795	0.0	51.21509	50
CTTGAAA	3010	0.0	50.928875	57
CGTATGC	3205	0.0	50.778675	41
GTCTTCT	2840	0.0	50.65006	49
AAGGGGG	2980	0.0	50.619453	69