SRR1779950_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779950_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	348983
Sequences flagged as poor quality	0
Sequence length	76
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	33693	9.654625010387326	No Hit
CTTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGGTG	3950	1.131860291188969	No Hit
ATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGGTGGTC	701	0.2008693833223968	No Hit
CTCTTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGG	593	0.16992231713292624	No Hit
TCTTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGGT	433	0.12407481166704394	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACGGA	15	0.0022234041	70.00157	19
ACGTCGA	15	0.0022246682	69.99154	10
CGTATGT	20	0.0069473805	52.501183	51
ACGTATG	20	0.0069473805	52.501183	50
GTTCTAT	30	5.877244E-4	46.661026	1
GGTCTAA	35	0.0012553129	39.99517	1
GGTCCCA	45	9.195271E-5	38.88419	1
TCGCCGT	685	0.0	37.811073	52
TGGTCGC	720	0.0	37.4314	49
GCCGTAT	690	0.0	37.029823	54
CGGTGGT	750	0.0	36.400818	46
TCGGTGG	755	0.0	36.159756	45
CGTATCA	725	0.0	35.724945	56
CGCCGTA	725	0.0	35.724945	53
TCTCGGT	745	0.0	35.23569	43
TAGATCT	745	0.0	35.23569	39
ACCCGAT	40	0.002416865	35.00079	27
TACCGAC	40	0.002416865	35.00079	67
AGATCTC	740	0.0	35.000786	40
GATCATA	40	0.0024185649	34.995773	1