Basic Statistics
Measure | Value |
---|---|
Filename | SRR1779950_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 348983 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTTATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCCGT | 21942 | 6.287412280827433 | No Hit |
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | 7329 | 2.1001022972465706 | No Hit |
CTCTTATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCC | 2871 | 0.8226761762034254 | No Hit |
TCTTATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCCG | 2324 | 0.6659350168919403 | No Hit |
CATATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCCGT | 891 | 0.255313296063132 | RNA PCR Primer, Index 19 (95% over 21bp) |
ATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCCGTCTT | 733 | 0.21003888441557325 | No Hit |
TCTTTATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCC | 406 | 0.11633804511967633 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTTAACG | 15 | 0.0022241077 | 69.99599 | 14 |
AGGGGGG | 2830 | 0.0 | 60.84457 | 70 |
AAGGGGG | 3230 | 0.0 | 52.659523 | 69 |
ATCGTAT | 40 | 7.472154E-7 | 52.49699 | 39 |
CTCGACA | 20 | 0.006949576 | 52.49699 | 38 |
CCGTCTT | 3385 | 0.0 | 50.765186 | 47 |
GCCGTCT | 3420 | 0.0 | 50.450325 | 46 |
CGTCTTC | 3415 | 0.0 | 50.421707 | 48 |
TATGCCG | 3425 | 0.0 | 50.27449 | 43 |
AGCCGTC | 35 | 2.0851674E-5 | 49.997135 | 45 |
ATGCCGT | 3430 | 0.0 | 49.997135 | 44 |
ATCTCGT | 3465 | 0.0 | 49.99713 | 37 |
CGTATGC | 3480 | 0.0 | 49.8822 | 41 |
TCGTATG | 3495 | 0.0 | 49.86839 | 40 |
CTCGTAT | 3465 | 0.0 | 49.795124 | 39 |
TGCCGTC | 3445 | 0.0 | 49.779438 | 45 |
GTATGCC | 3470 | 0.0 | 49.723373 | 42 |
CTTGAAA | 3485 | 0.0 | 49.60978 | 57 |
TCTCGTA | 3500 | 0.0 | 49.597157 | 38 |
AATCTCG | 3480 | 0.0 | 49.58049 | 36 |