SRR1779948_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779948_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	54245
Sequences flagged as poor quality	0
Sequence length	76
%GC	80

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	31984	58.962116324085166	No Hit
CTTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGGTG	3957	7.294681537468891	No Hit
TCTTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGGT	453	0.8351000092174394	No Hit
ATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGGTGGTC	440	0.8111346667895659	No Hit
CTCTTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGG	386	0.7115863213199373	No Hit
TCTTTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGG	124	0.2285924970043322	No Hit
CTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGGTGG	78	0.14379205456724123	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTTTAT	20	7.860762E-5	70.00001	1
CAATAAG	15	0.002213453	70.0	44
TGAACCA	15	0.002213453	70.0	47
AAAGGGG	30	8.2733095E-6	58.333332	70
TACTCCA	25	2.3706973E-4	55.999996	28
AAAAAGG	270	0.0	54.444447	70
ATGTGTA	20	0.006916529	52.500004	34
AAAATAT	20	0.006916529	52.500004	15
CATGTGT	20	0.006916529	52.500004	33
ATCCTTG	20	0.006916529	52.500004	30
CTATCCT	20	0.006916529	52.500004	34
TCTCGGT	670	0.0	48.58209	43
GATCTCG	685	0.0	48.540146	41
AGATCTC	685	0.0	48.540146	40
ATCTCGG	680	0.0	48.382355	42
CTTGTGT	660	0.0	48.257576	33
TCGGTGG	675	0.0	48.22222	45
CTCGGTG	675	0.0	48.22222	44
GTAGATC	690	0.0	48.188408	38
GTATCAT	690	0.0	48.188408	57