SRR1779946_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779946_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	168331
Sequences flagged as poor quality	0
Sequence length	76
%GC	58

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	36579	21.730400223369433	No Hit
CTTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGTG	7475	4.440655613048102	No Hit
ATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGTGGTC	1316	0.7817930149526826	No Hit
CTCTTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGG	878	0.5215913883954827	No Hit
TCTTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGT	853	0.5067396973819439	No Hit
TCTTTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGG	229	0.13604148968401542	No Hit
CTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGTGG	211	0.12534827215426747	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCACGC	15	0.002223917	69.981575	31
ATGCGCC	20	0.0069408463	52.50178	20
TGCCACG	20	0.00694901	52.486187	30
GCAATCT	20	0.00694901	52.486187	29
GTCGCCG	1320	0.0	43.221165	51
GCCGTAT	1305	0.0	43.18154	54
TCGCCGT	1320	0.0	42.956005	52
TGGTCGC	1345	0.0	42.4178	49
CGCCGTA	1330	0.0	42.382458	53
GTATCAT	1310	0.0	42.215176	57
GGTCGCC	1355	0.0	42.10475	50
CGGTGGT	1365	0.0	42.05271	46
CGTATCA	1325	0.0	42.001427	56
TCGGTGG	1360	0.0	41.949955	45
TAGATCT	1345	0.0	41.897335	39
CATTAAA	1330	0.0	41.84353	61
AGATCTC	1350	0.0	41.754566	40
GGTGGTC	1375	0.0	41.746872	47
GTAGATC	1360	0.0	41.704987	38
CTCGGTG	1360	0.0	41.692593	44