SRR1779946_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779946_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	168331
Sequences flagged as poor quality	0
Sequence length	76
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGT	13833	8.21773767161129	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	13164	7.820306420088992	No Hit
CATATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGT	8236	4.892741087500223	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCG	2726	1.619428388116271	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCC	2200	1.3069488091914145	No Hit
CACTTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCC	828	0.4918880063684051	No Hit
CATAAACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGT	728	0.43248124231424995	No Hit
ATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGTCTT	575	0.3415888933113924	Illumina PCR Primer Index 3 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCC	519	0.3083211054410655	No Hit
CAAATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGT	461	0.2738651822896555	No Hit
CTTAAACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGT	411	0.2441618002625779	No Hit
CTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGTC	353	0.20970587711116787	No Hit
CTAATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGT	235	0.13960589552726474	No Hit
TATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGTCT	193	0.11465505462451954	No Hit
AAACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGTCTT	175	0.10396183709477161	Illumina PCR Primer Index 3 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTATCG	15	0.0022229052	69.9896	17
GCTTAAT	15	0.0022229052	69.9896	48
CATATAC	935	0.0	62.859676	1
ATATACA	960	0.0	61.95155	2
AGGGGGG	2940	0.0	60.961445	70
CGTCTTA	25	2.3869074E-4	55.991676	48
TTATAGC	25	2.3869074E-4	55.991676	31
AACTCGT	25	2.3869074E-4	55.991676	37
CAACTCG	25	2.3869074E-4	55.991676	36
ACTTATA	160	0.0	54.663128	2
CGTCTAC	45	2.6882844E-8	54.43635	48
GAATCTC	65	3.6379788E-12	53.838154	35
ACGAACG	20	0.0069295424	52.523415	29
AGTCTGA	20	0.006937698	52.5078	70
GTCCATA	20	0.006937698	52.5078	30
TATCGCT	20	0.006937698	52.5078	19
CACCCGT	20	0.006937698	52.5078	23
GGGTAGT	20	0.0069458606	52.4922	42
CGTTCTC	20	0.0069458606	52.4922	41
GTAGCAA	20	0.0069458606	52.4922	34