SRR1779945_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779945_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	315768
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCCGT	11760	3.724253249220947	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	9874	3.1269793012591522	No Hit
CATATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCCGT	6251	1.9796179473537532	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCCG	2027	0.6419269843682703	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCC	1677	0.5310861138557421	No Hit
CACTTATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCC	572	0.18114565123761747	No Hit
CATAAACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCCGT	540	0.1710116287907578	No Hit
ATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCCGTCTT	416	0.13174229180917635	RNA PCR Primer, Index 34 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCC	407	0.12889209799599707	No Hit
CAAATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCCGT	358	0.1133743761242431	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	2705	0.0	58.60241	70
CGTATGA	50	9.804353E-10	55.989235	41
TGACGTC	50	9.804353E-10	55.989235	45
CATATAC	930	0.0	54.18313	1
AAGGGGG	3045	0.0	51.82911	69
ATCTCGT	3100	0.0	51.248207	37
TCTCGTA	3150	0.0	51.101284	38
TCGTATG	3185	0.0	51.089073	40
CTCGTAT	3125	0.0	51.062176	39
CGTATGC	3155	0.0	51.0203	41
CGTCTTC	3025	0.0	51.01498	48
CCGTCTT	3025	0.0	50.8993	47
GATCTCG	3160	0.0	50.718094	36
TATGCCG	3135	0.0	50.67606	43
GCCGTCT	3060	0.0	50.660194	46
GGATCTC	3165	0.0	50.63797	35
GGGATCT	3155	0.0	50.465733	34
CTTGAAA	3185	0.0	50.44584	57
TGCCGTC	3150	0.0	50.434746	45
GTCTTCT	3040	0.0	50.417934	49