SRR1779944_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779944_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	228960
Sequences flagged as poor quality	0
Sequence length	76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	29049	12.687368972746333	No Hit
CTTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGTG	6127	2.6760132774283716	No Hit
ATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGTGGTC	874	0.38172606568832984	No Hit
CTCTTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGG	772	0.33717679944095036	No Hit
TCTTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGT	623	0.272099930118798	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATTCCC	20	0.0069449646	52.5	8
TGCGTTG	20	0.0069449646	52.5	12
CTTTATA	35	2.0821912E-5	50.000004	2
GCCGTAT	1100	0.0	46.454548	54
CTCGGTG	1125	0.0	46.355553	44
TGGTCGC	1125	0.0	46.04444	49
TCGCCGT	1110	0.0	46.036034	52
TCTCGGT	1135	0.0	45.94714	43
TCGGTGG	1140	0.0	45.745613	45
CGGTGGT	1145	0.0	45.545853	46
GATCTCG	1130	0.0	45.530975	41
AGATCTC	1150	0.0	45.04348	40
GTATCAT	1135	0.0	45.02203	57
GTCGCCG	1140	0.0	44.82456	51
CGTATCA	1140	0.0	44.82456	56
CCGTATC	1140	0.0	44.82456	55
TAGATCT	1145	0.0	44.628822	39
GTGGTCG	1170	0.0	44.57265	48
ATCTCGG	1160	0.0	44.353447	42
CGCCGTA	1145	0.0	44.323143	53