SRR1779942_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779942_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	222128
Sequences flagged as poor quality	0
Sequence length	76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	32043	14.425466397752649	No Hit
CTTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGTG	5558	2.5021609162284806	No Hit
ATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGTGGTC	879	0.39571778434056043	No Hit
CTCTTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGG	650	0.29262407260678525	No Hit
TCTTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGT	616	0.27731758265504575	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGATATC	15	0.0022225352	70.0	21
ACGAGTA	15	0.0022225352	70.0	49
CGAGTAC	20	0.006944691	52.500004	50
TACGGCG	20	0.006944691	52.500004	63
ACGTCTC	20	0.006944691	52.500004	35
TTACGTC	20	0.006944691	52.500004	33
ACCCGGC	20	0.006944691	52.500004	48
GTCGCCG	845	0.0	41.005917	51
GCCGTAT	845	0.0	41.005917	54
TGGTCGC	880	0.0	40.965908	49
TCGGTGG	900	0.0	40.833332	45
ATCTCGG	875	0.0	40.8	42
CTCGGTG	900	0.0	40.444447	44
TCTCGGT	900	0.0	40.444447	43
TCGCCGT	850	0.0	40.352943	52
GTATCAT	885	0.0	40.338985	57
CGCCGTA	860	0.0	40.2907	53
CGTATCA	870	0.0	40.229885	56
GTAGATC	880	0.0	40.170452	38
TCACCGT	35	0.001253583	40.0	31