SRR1779942_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779942_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	222128
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	9922	4.466793920622344	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTCGCGGCATCTCGTATGCCGT	7530	3.389937333429374	No Hit
CATATACACATCTCCGAGCCCACGAGACTTCGCGGCATCTCGTATGCCGT	3911	1.7606965353309805	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTCGCGGCATCTAGTATGCCGT	1039	0.4677483252899229	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTCGCGGCATCTCGTATGCCG	912	0.4105740834113665	No Hit
CATATACACATCTCCGAGCCCACGAGACTTCGCGGCATCTAGTATGCCGT	627	0.2822696823453144	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTCGCGGCATCTCGTATGCC	568	0.255708420370237	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTCGCGGCATCTCGTATGACGT	357	0.16071814449326516	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTCGCGGCATCTAGTATGCCG	280	0.12605344666138443	No Hit
CATATACACATCTCCGAGCCCACGAGACTTCGCGGCATCTCGTATGACGT	268	0.12065115609018223	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTCGCGGCATCTCGTATTCCGT	255	0.11479867463804654	No Hit
CACTTATACACATCTCCGAGCCCACGAGACTTCGCGGCATCTCGTATGCC	234	0.1053446661384427	No Hit
CATAAACACATCTCCGAGCCCACGAGACTTCGCGGCATCTCGTATGCCGT	223	0.10039256644817401	No Hit

Adapter graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTAACA	15	0.0022192474	70.02612	23
AAGTCGT	15	0.0022232158	69.9946	19
TCGAATG	35	2.9619332E-7	60.008877	40
AGGGGGG	1875	0.0	58.9954	70
CATATAC	870	0.0	58.7311	1
TGCCGAC	30	8.361769E-6	58.32883	45
TGACGTA	80	0.0	56.87061	45
GATCTCT	25	2.3877356E-4	55.995674	29
CAGTAGT	25	2.3877356E-4	55.995674	1
CGAGACA	70	0.0	55.020527	23
GCCGTAA	290	0.0	54.306156	46
ATATACA	965	0.0	54.03728	2
TCGTATG	1745	0.0	53.962135	40
CCGTCTT	1000	0.0	53.54587	47
CTCGTAT	1855	0.0	53.40413	39
GCCGTCT	990	0.0	53.37972	46
TCTCGTA	1955	0.0	53.358276	38
CCGTAAT	355	0.0	53.23533	47
CGTATGC	1705	0.0	53.163055	41
ATCTCGT	2020	0.0	52.85435	37