SRR1779940_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779940_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	339884
Sequences flagged as poor quality	0
Sequence length	76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	30587	8.999246801850044	No Hit
CTTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGTG	6511	1.915653575925904	No Hit
ATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGTGGTC	1066	0.3136364171305504	No Hit
CTCTTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGG	799	0.23508020383424932	No Hit
TCTTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGT	657	0.19330124395381953	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGACCG	15	0.0022238493	69.99764	4
TAACCGA	15	0.0022238493	69.99764	3
CGCTTTA	20	0.0069447258	52.505962	27
GATCCTA	20	0.006948768	52.498238	1
AGCTCGA	20	0.006948768	52.498238	40
CCGTTGT	20	0.006948768	52.498238	1
GCCGTAT	1320	0.0	43.748528	54
TCGCCGT	1325	0.0	43.583443	52
CGCCGTA	1320	0.0	43.483387	53
CGGTGGT	1345	0.0	43.195576	46
TGGTCGC	1350	0.0	42.77634	49
CGTATCA	1355	0.0	42.3602	56
CTCGGTG	1355	0.0	42.3602	44
GTATCAT	1355	0.0	42.3602	57
TCGGTGG	1365	0.0	42.30627	45
CCGTATC	1365	0.0	42.049866	55
GTCGCCG	1380	0.0	41.846416	51
AGATCTC	1375	0.0	41.489513	40
TCTCGGT	1395	0.0	41.396458	43
TAGATCT	1390	0.0	41.293575	39