SRR1779939_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779939_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	110793
Sequences flagged as poor quality	0
Sequence length	76
%GC	61

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	30264	27.315805150144868	No Hit
CTTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGTG	6744	6.087027158755517	No Hit
ATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGTGGTC	1261	1.1381585479227028	No Hit
CTCTTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGG	818	0.7383137923876057	No Hit
TCTTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGT	761	0.6868664987860245	No Hit
TCTTTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGG	188	0.16968581047539105	No Hit
TATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGTGGT	180	0.16246513768920418	No Hit
CTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGTGG	167	0.15073154441165054	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAGTCAA	15	0.0022160078	70.02846	29
TTAATAC	20	7.898841E-5	69.99684	2
ATCTGGC	15	0.0022199827	69.99684	10
TAATCGA	15	0.0022199827	69.99684	8
TCTGGCG	40	1.05574145E-8	61.24724	11
CTTAATA	25	2.3821136E-4	55.997475	1
AAGGGGG	175	0.0	53.99756	70
CCGTCCT	20	0.0069243982	52.521343	32
GCATAAA	20	0.0069367825	52.49763	21
CGTGCGC	20	0.0069367825	52.49763	8
GCGCGCG	20	0.0069367825	52.49763	56
CTATACA	20	0.0069367825	52.49763	1
ATCAGGC	20	0.0069367825	52.49763	16
TTCGTAT	20	0.0069367825	52.49763	2
GTTCGTA	20	0.0069367825	52.49763	1
ACCAGTG	20	0.0069367825	52.49763	45
GAAGTTC	20	0.0069367825	52.49763	52
GTCCGAA	20	0.0069367825	52.49763	48
ACATGGA	20	0.0069367825	52.49763	47
CGTCGTG	20	0.0069367825	52.49763	64