SRR1779938_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779938_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	155502
Sequences flagged as poor quality	0
Sequence length	76
%GC	56

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	28837	18.544456019858266	No Hit
CTTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGTG	6308	4.056539465730345	No Hit
ATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGTGGTC	1061	0.6823063368959885	No Hit
CTCTTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGG	816	0.524752093220666	No Hit
TCTTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGT	683	0.4392226466540623	No Hit
CTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGTGG	216	0.13890496585252923	No Hit
TCTTTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGG	208	0.13376033748762076	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCAGTG	15	0.0022189713	70.01833	20
TCGTGCG	15	0.0022189713	70.01833	2
GTGCGCG	30	1.016615E-7	70.01833	4
AGGTACT	15	0.0022218046	69.99582	67
GTACACC	15	0.0022218046	69.99582	5
AACGGCC	15	0.0022218046	69.99582	37
AACGATT	15	0.0022218046	69.99582	68
TGACACA	20	7.9094505E-5	69.99581	25
TTAATAC	25	2.3815047E-4	56.014668	3
CACATGT	25	2.385294E-4	55.99666	28
TGCGCGT	25	2.385294E-4	55.99666	5
CAGTGAC	25	2.385294E-4	55.99666	22
TTAACGG	25	2.385294E-4	55.99666	35
TCTATAG	25	2.385294E-4	55.99666	23
CTTTATA	45	2.6777343E-8	54.458706	2
GCCCAGT	20	0.006933607	52.51375	19
CGATTAA	20	0.006933607	52.51375	70
GCGTCCC	20	0.006933607	52.51375	20
GGTCGCA	20	0.0069424347	52.49686	50
TAGGTAC	20	0.0069424347	52.49686	66