SRR1779936_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779936_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	341332
Sequences flagged as poor quality	0
Sequence length	76
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	29317	8.588998394524978	No Hit
CTTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGTG	5681	1.664361970163946	No Hit
ATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGTGGTC	983	0.287989406208618	No Hit
CTCTTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGG	650	0.19043043136887253	No Hit
TCTTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGT	603	0.17666084633143098	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGAGCG	30	8.364514E-6	58.336876	5
CGGTTCG	20	0.006950229	52.495495	14
TCTGGAT	20	0.006950229	52.495495	10
GCCGTAT	1010	0.0	44.359127	54
TCGCCGT	1020	0.0	44.26091	52
TGGTCGC	1040	0.0	43.746246	49
TCGGTGG	1050	0.0	43.662918	45
CGTATCA	1035	0.0	43.62584	56
GATCTCG	1055	0.0	43.462353	41
CTCGGTG	1055	0.0	43.455986	44
GTCGCCG	1050	0.0	43.329613	51
CGGTGGT	1060	0.0	43.251007	46
TCTCGGT	1075	0.0	42.979355	43
GTATCAT	1035	0.0	42.949467	57
ATCTCGG	1075	0.0	42.65375	42
GTAGATC	1075	0.0	42.32815	38
AGATCTC	1090	0.0	42.066772	40
GTGGTCG	1095	0.0	41.868553	48
TAGATCT	1090	0.0	41.745655	39
CGCCGTA	1085	0.0	41.29283	53