SRR1779935_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779935_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	184491
Sequences flagged as poor quality	0
Sequence length	76
%GC	57

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	34756	18.838859348152486	No Hit
CTTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGTG	7248	3.9286469258663024	No Hit
ATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGTGGTC	1169	0.6336352450797058	No Hit
TCTTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGT	790	0.42820516989988666	No Hit
CTCTTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGG	780	0.422784851293559	No Hit
TCTTTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGG	240	0.13008764655186433	No Hit
CTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGTGG	205	0.11111653142971743	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTCAG	20	7.909334E-5	70.00299	52
GCTTTTT	20	7.909334E-5	70.00299	28
GCTGCGA	15	0.00222156	70.00298	24
ATACACG	15	0.0022239508	69.98401	4
CTCACCG	25	2.3852565E-4	56.002388	17
GGCTTTT	25	2.3852565E-4	56.002388	27
TAACCGG	25	2.3852565E-4	56.002388	22
TAAGGAC	25	2.3852565E-4	56.002388	19
ACGGTGC	25	2.3852565E-4	56.002388	8
CATGCGG	20	0.0069342167	52.51648	42
ACCGTCG	20	0.0069342167	52.51648	44
ATGCCAT	20	0.0069342167	52.51648	43
ACTTCGT	20	0.00694166	52.502243	28
CCGTCGG	20	0.00694166	52.502243	45
AAACGAG	20	0.00694166	52.502243	11
AACGAGC	20	0.00694166	52.502243	12
TTCGCGG	20	0.00694166	52.502243	8
GTGCGCA	20	0.00694166	52.502243	23
TAATACG	20	0.006949109	52.48801	4
GGTCACG	20	0.006949109	52.48801	58