SRR1779934_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779934_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	338867
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGT	22817	6.73332015215409	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCG	3787	1.1175475924182645	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCC	2687	0.7929364617976964	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1843	0.5438711943033697	No Hit
ATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGTCTT	1569	0.46301351267606466	Illumina PCR Primer Index 3 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCC	827	0.24404855002109974	No Hit
CTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGTC	515	0.15197702933599316	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAATGT	20	7.921557E-5	69.99822	15
AGGGGGG	2680	0.0	58.636578	70
CTTTATA	190	0.0	55.26176	2
CGTCTAC	20	0.006948524	52.49867	48
GCCGTCT	3660	0.0	47.14362	46
CCGTCTT	3645	0.0	47.049564	47
CGTCTTC	3685	0.0	47.013737	48
AGCCGTC	30	5.8742345E-4	46.66549	45
ATCGTAT	60	4.9240043E-9	46.66549	39
CGGTATG	30	5.8742345E-4	46.66549	43
TATACGG	30	5.8742345E-4	46.66549	2
TATGCCG	3780	0.0	46.48031	43
TGCCGTC	3785	0.0	46.141502	45
CGTATGC	3840	0.0	46.11863	41
TCTTCTG	3720	0.0	46.100983	50
ATGCCGT	3815	0.0	46.05388	44
GTATGCC	3835	0.0	45.904964	42
TCGTATG	3930	0.0	45.77492	40
CATCTCG	3885	0.0	45.764606	36
CTCGTAT	3890	0.0	45.705784	39