SRR1779932_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779932_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	87052
Sequences flagged as poor quality	0
Sequence length	76
%GC	65

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	27772	31.902770757708037	No Hit
CTTATACACATCTGACGCTGCCGACGACTCCTTACGTGTAGATCTCGGTG	606	0.6961356430639158	No Hit
ATACACATCTGACGCTGCCGACGACTCCTTACGTGTAGATCTCGGTGGTC	137	0.15737719983458162	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTTAGT	15	0.002217984	70.0	34
GGTGTAA	20	0.0069305794	52.5	1
CCGTACC	20	0.0069305794	52.5	45
GGGCCGC	20	0.0069305794	52.5	25
GGTCTCG	20	0.0069305794	52.5	41
TCAAGTG	20	0.0069305794	52.5	25
GGCTAAT	20	0.0069305794	52.5	16
TCTGGCG	30	5.849343E-4	46.666664	11
ACTATCT	35	0.0012493869	40.0	35
CGTATCA	100	7.2759576E-12	38.5	56
CCGTATC	100	7.2759576E-12	38.5	55
TCGGTGG	100	7.2759576E-12	38.5	45
GTGGTCG	110	0.0	38.181816	48
TCGCCGT	105	1.2732926E-11	36.666668	52
GTCGCCG	105	1.2732926E-11	36.666668	51
CTCGGTG	105	1.2732926E-11	36.666668	44
GTATCAT	105	1.2732926E-11	36.666668	57
CGCCGTA	105	1.2732926E-11	36.666668	53
TGGTCGC	105	1.2732926E-11	36.666668	49
GTAGATC	110	2.3646862E-11	35.0	38