SRR1779931_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779931_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	290199
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCCGT	13006	4.481752176954434	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCCG	2475	0.8528630353653872	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCC	1705	0.5875278688072668	No Hit
ATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCCGTCTT	983	0.3387330762683538	RNA PCR Primer, Index 14 (95% over 21bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	852	0.29359163884093326	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCC	418	0.1440390904172654	No Hit
CTATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCCGTC	298	0.10268815536924661	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCTTA	15	0.0022227457	70.00379	48
AACGACG	15	0.0022227457	70.00379	70
ACGTATG	20	7.923282E-5	69.99173	40
TGCCGTA	20	7.923282E-5	69.99173	45
AGTCTTC	35	2.9670628E-7	60.00325	48
CACGTAT	25	2.3894438E-4	55.99338	39
AGGGGGG	1635	0.0	53.30564	70
CTGCGCT	20	0.006945337	52.502846	52
CTTGAGT	20	0.006950073	52.493797	31
CTTTATA	70	7.2759576E-12	50.011326	2
GTTACCA	35	2.0850399E-5	49.99409	31
ACACATT	30	5.8705296E-4	46.669197	6
TCAGCAT	30	5.8705296E-4	46.669197	53
CTAAGCG	30	5.8755203E-4	46.66115	45
ATCGTAT	45	1.6827744E-6	46.66115	39
ATATCGT	45	1.6827744E-6	46.66115	37
TTCCCAA	30	5.8755203E-4	46.66115	32
AATCTCG	30	5.8755203E-4	46.66115	36
CGGAGAG	30	5.8755203E-4	46.66115	36
CGTATGC	2350	0.0	45.271244	41