SRR1779929_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779929_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	250294
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCCGT	9053	3.616946470950163	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCCG	1862	0.7439251440306199	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCC	947	0.3783550544559598	No Hit
ATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCCGTCTT	829	0.33121049645616757	Illumina PCR Primer Index 11 (95% over 22bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	551	0.22014111404987735	No Hit
CTTATACACATCTCCGAGCCCACGAGACGCCGCTCCATCTCGTATGCCGT	484	0.19337259382965633	No Hit
ATTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCCGT	391	0.15621628964337939	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCC	387	0.15461816903321696	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAATAC	25	2.3884898E-4	55.99489	3
AGGGGGG	1270	0.0	52.081856	70
CTTTATA	80	0.0	48.13022	2
CACGCTA	30	5.855847E-4	46.69039	23
GCAGCGT	30	5.867401E-4	46.671734	1
AGCGTCA	30	5.8731844E-4	46.662407	3
GCCGTCT	1605	0.0	43.827774	46
CCGATAA	40	4.5707202E-5	43.77224	22
CAGAGTA	40	4.5815228E-5	43.75474	1
CGTCTTC	1610	0.0	43.69166	48
TCGTATG	1750	0.0	43.396034	40
CCGTCTT	1605	0.0	43.391678	47
CTCGTAT	1735	0.0	43.367794	39
TATGCCG	1710	0.0	43.183193	43
TCTCGTA	1750	0.0	42.99607	38
TCTTCTG	1645	0.0	42.974796	50
CGTATGC	1735	0.0	42.964375	41
ATGCCGT	1730	0.0	42.886253	44
GTATGCC	1735	0.0	42.762665	42
CTTCTGC	1670	0.0	42.750587	51