SRR1779928_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779928_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	263018
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGT	15867	6.032666965758997	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCG	2552	0.9702757986145436	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCC	1835	0.6976708818407865	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1283	0.48779931411538374	No Hit
ATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGTCTT	1056	0.40149343390946624	TruSeq Adapter, Index 9 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCC	623	0.23686591792196734	No Hit
ATTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGT	361	0.1372529636754899	No Hit
CTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGTC	329	0.12508649598126365	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGAGACG	15	0.0022221054	70.00704	23
GGAGCTA	15	0.002223782	69.99373	1
AAAAACG	15	0.002223782	69.99373	66
GTCGTCG	15	0.002223782	69.99373	13
GGTCTCG	15	0.002223782	69.99373	47
GTATGAC	40	1.063745E-8	61.244514	42
GCAGCGT	35	2.9689363E-7	59.99462	1
CTTTATA	75	0.0	55.994984	2
AAGCCGT	25	2.3886938E-4	55.99498	44
AGGGGGG	2165	0.0	55.617596	70
CGTCTTA	20	0.006943345	52.50528	48
TCTGCGG	20	0.006948569	52.495296	12
GGCACTC	20	0.006948569	52.495296	1
GATCATA	40	7.466715E-7	52.495296	1
GTACTAG	20	0.006948569	52.495296	3
CCGACCC	20	0.006948569	52.495296	16
GATCTTA	20	0.006948569	52.495296	1
CACGTAT	20	0.006948569	52.495296	39
AAAGATC	35	2.0841499E-5	49.995518	33
CGTATGA	50	6.181472E-8	48.99561	41