SRR1779923_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779923_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	199146
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCGT	21561	10.826730137687928	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCG	3641	1.828306870336336	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCC	2290	1.1499101161961576	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1730	0.8687093890914204	No Hit
ATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCGTCTT	1373	0.6894439255621504	RNA PCR Primer, Index 19 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCC	751	0.3771102608136744	No Hit
CTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCGTC	415	0.20838982455083205	No Hit
ATTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCGT	369	0.18529119339580005	No Hit
TATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCGTCT	245	0.12302531810832254	RNA PCR Primer, Index 19 (95% over 22bp)
CTTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGACGT	201	0.1009309752643789	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGAGT	20	7.923809E-5	69.97991	4
ATATTCC	15	0.0022247275	69.979904	39
AAACTCG	35	2.969282E-7	59.98278	36
AGGGGGG	2585	0.0	59.843113	70
GGCTTAA	30	8.369003E-6	58.31659	1
CGTCTTA	25	2.3866442E-4	55.99799	48
GTACTAG	25	2.389609E-4	55.98393	1
ATCGTAT	45	2.694469E-8	54.42882	39
CGTATGA	65	3.6379788E-12	53.830704	41
AAAGCGT	20	0.0069377245	52.511307	25
TACCACG	20	0.006944623	52.498116	17
TCGTGAG	20	0.006944623	52.498116	17
CGGCCTT	20	0.0069515263	52.484936	9
CCTACAT	20	0.0069515263	52.484936	41
TAGCCGG	20	0.0069515263	52.484936	37
AACTCGT	40	7.4676245E-7	52.484936	37
GTAAGGT	20	0.0069515263	52.484936	4
TAGCTTG	20	0.0069515263	52.484936	47
ATCTGCG	20	0.0069515263	52.484936	34
TATGACG	75	0.0	51.3186	43